Core Package of FLR, Fisheries Modelling in R


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Documentation for package ‘FLCore’ version 2.6.2

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A B C D E F G H I L M N O P Q R S T U V W X Y misc

-- A --

accessors Accesor and replacement methods for FLCore classes
AIC Method AIC
AIC-method Method AIC
aliases Short aliases for most FLCore classes construction methods
areaMeans Summaries by dimension
areaSums Summaries by dimension
areaSums-method Summaries by dimension
areaVars Summaries by dimension

-- B --

barchart-method Lattice methods
BIC Method BIC Bayesian information criterion (BIC) method
BIC-method Method BIC Bayesian information criterion (BIC) method
bubbles Method Bubbles plot
bubbles-method Method Bubbles plot
bubbles-methods Method Bubbles plot
bwplot-method Lattice methods

-- C --

catch Accesor and replacement methods for FLCore classes
catch-method Class FLStock
catch-method Class FLStockLen
catch.n Accesor and replacement methods for FLCore classes
catch.n-method Class FLIndex
catch.n-method Class FLIndexBiomass
catch.n-method Class FLStock
catch.n-method Class FLStockLen
catch.n<- Accesor and replacement methods for FLCore classes
catch.n<--method Class FLIndex
catch.n<--method Class FLIndexBiomass
catch.n<--method Class FLStock
catch.n<--method Class FLStockLen
catch.q Accesor and replacement methods for FLCore classes
catch.q<- Accesor and replacement methods for FLCore classes
catch.wt Accesor and replacement methods for FLCore classes
catch.wt-method Class FLIndex
catch.wt-method Class FLIndexBiomass
catch.wt-method Class FLStock
catch.wt-method Class FLStockLen
catch.wt<--method Class FLIndex
catch.wt<--method Class FLIndexBiomass
catch.wt<--method Class FLStock
catch.wt<--method Class FLStockLen
catch<--method Class FLStock
catch<--method Class FLStockLen
compute Methods to compute quantities
computeCatch Methods to compute quantities
computeCatch-method Methods to compute quantities
computeCatch-methods Methods to compute quantities
computeDiscards Methods to compute quantities
computeDiscards-method Methods to compute quantities
computeDiscards-methods Methods to compute quantities
computeLandings Methods to compute quantities
computeLandings-method Methods to compute quantities
computeLandings-methods Methods to compute quantities
computeStock Methods to compute quantities
computeStock-method Methods to compute quantities
computeStock-methods Methods to compute quantities
covar-method Class FLSR
covar<--method Class FLSR
createFLAccesors Create accesor methods for a given class

-- D --

datasets FLCore datasets
densityplot-method Lattice methods
desc-method Class FLBiol
desc-method Class FLIndex
desc-method Class FLIndexBiomass
desc-method Class FLSR
desc-method Class FLStock
desc-method Class FLStockLen
desc<--method Class FLBiol
desc<--method Class FLIndex
desc<--method Class FLIndexBiomass
desc<--method Class FLSR
desc<--method Class FLStock
desc<--method Class FLStockLen
details-method Class FLSR
details<--method Class FLSR
dimMeans Summaries by dimension
dims Method dims
dims-method Method dims
dims-methods Method dims
dimSummaries Summaries by dimension
dimSums Summaries by dimension
dimVars Summaries by dimension
discards-method Class FLStock
discards-method Class FLStockLen
discards.n-method Class FLStock
discards.n-method Class FLStockLen
discards.n<--method Class FLStock
discards.n<--method Class FLStockLen
discards.wt-method Class FLStock
discards.wt-method Class FLStockLen
discards.wt<--method Class FLStock
discards.wt<--method Class FLStockLen
discards<--method Class FLStock
discards<--method Class FLStockLen
distribution-method Class FLIndex
distribution-method Class FLIndexBiomass
distribution-method Class FLSR
distribution<--method Class FLIndex
distribution<--method Class FLIndexBiomass
distribution<--method Class FLSR
dotplot-method Lattice methods

-- E --

effort-method Class FLIndex
effort-method Class FLIndexBiomass
effort<--method Class FLIndex
effort<--method Class FLIndexBiomass
evalPredictModel Evaluates a predictModel slot inside the object cointaining it
Extract Extract

-- F --

fec-method Class FLBiol
fec<--method Class FLBiol
fitted-method Class FLSR
fitted<--method Class FLSR
FLArray Class FLArray
FLArray-class Class FLArray
FLBiol Class FLBiol
FLBiol-class Class FLBiol
FLBiol-method Class FLBiol
FLBiol-methods Class FLBiol
FLBiolcpp-class Class FLBiol
FLBiols Class FLBiols
FLBiols-class Class FLBiols
FLBiols-method Class FLBiols
FLBiols-methods Class FLBiols
flc Short aliases for most FLCore classes construction methods
FLCohort Class FLCohort
FLCohort-class Class FLCohort
FLCohort-method Class FLCohort
FLCohort-methods Class FLCohort
FLCohorts Class FLCohorts
FLCohorts-class Class FLCohorts
FLCohorts-method Class FLCohorts
FLCohorts-methods Class FLCohorts
FLComp Class FLComp
FLComp-class Class FLComp
FLComps Class FLComps
FLComps-class Class FLComps
flcs Short aliases for most FLCore classes construction methods
FLI Class FLI
fli Short aliases for most FLCore classes construction methods
FLI-class Class FLI
flib Short aliases for most FLCore classes construction methods
FLIndex Class FLIndex
FLIndex-class Class FLIndex
FLIndex-method Class FLIndex
FLIndex-methods Class FLIndex
FLIndexBiomass Class FLIndexBiomass
FLIndexBiomass-class Class FLIndexBiomass
FLIndexBiomass-method Class FLIndexBiomass
FLIndexBiomass-methods Class FLIndexBiomass
FLIndices Class FLIndices
FLIndices-class Class FLIndices
FLIndices-method Class FLIndices
FLIndices-methods Class FLIndices
FLlst Class FLlst
FLlst-class Class FLlst
FLlst-method Class FLlst
FLlst-methods Class FLlst
FLModel Class FLModel
FLModel-class Class FLModel
FLModel-method Class FLModel
FLModel-methods Class FLModel
FLModelSim Class FLModelSim
FLModelSim-class Class FLModelSim
FLModelSim-method Class FLModelSim
FLModelSim-methods Class FLModelSim
FLModelSims Class FLModelSims
FLModelSims-class Class FLModelSims
FLModelSims-method Class FLModelSims
FLModelSims-methods Class FLModelSims
flp Short aliases for most FLCore classes construction methods
FLPar Class FLPar
FLPar-class Class FLPar
FLPar-method Class FLPar
FLPar-methods Class FLPar
FLPars Class FLPars
FLPars-class Class FLPars
FLPars-method Class FLPars
FLPars-methods Class FLPars
flq Short aliases for most FLCore classes construction methods
flqd Short aliases for most FLCore classes construction methods
flqp Short aliases for most FLCore classes construction methods
flqs Short aliases for most FLCore classes construction methods
FLQuant FLQuant class for numerical data
FLQuant-class FLQuant class for numerical data
FLQuant-method FLQuant class for numerical data
FLQuant-methods FLQuant class for numerical data
FLQuantDistr A class for samples of a probability distribution
FLQuantDistr-class A class for samples of a probability distribution
FLQuantDistr-method A class for samples of a probability distribution
FLQuantDistr-methods A class for samples of a probability distribution
FLQuantJK A class for jackknifing fisheries data
FLQuantJK-class A class for jackknifing fisheries data
FLQuantPoint Class FLQuantPoint
FLQuantPoint-class Class FLQuantPoint
FLQuantPoint-method Class FLQuantPoint
FLQuantPoint-methods Class FLQuantPoint
FLQuants Class FLQuants
FLQuants-class Class FLQuants
FLQuants-method Class FLQuants
FLQuants-methods Class FLQuants
FLS Class FLS
fls Short aliases for most FLCore classes construction methods
FLS-class Class FLS
flsl Short aliases for most FLCore classes construction methods
FLSR Class FLSR
flsr Short aliases for most FLCore classes construction methods
FLSR-class Class FLSR
FLSR-method Class FLSR
FLSR-methods Class FLSR
FLSRs 'FLSRS' is a class that extends 'list' through 'FLlst' but implements a set of features that give a little bit more structure to list objects. The elements of 'FLSRs' must all be of class 'FLSR'. It implements a lock mechanism that, when turned on, does not allow the user to increase or decrease the object length.
FLSRs-class 'FLSRS' is a class that extends 'list' through 'FLlst' but implements a set of features that give a little bit more structure to list objects. The elements of 'FLSRs' must all be of class 'FLSR'. It implements a lock mechanism that, when turned on, does not allow the user to increase or decrease the object length.
FLSRs-method 'FLSRS' is a class that extends 'list' through 'FLlst' but implements a set of features that give a little bit more structure to list objects. The elements of 'FLSRs' must all be of class 'FLSR'. It implements a lock mechanism that, when turned on, does not allow the user to increase or decrease the object length.
FLSRs-methods 'FLSRS' is a class that extends 'list' through 'FLlst' but implements a set of features that give a little bit more structure to list objects. The elements of 'FLSRs' must all be of class 'FLSR'. It implements a lock mechanism that, when turned on, does not allow the user to increase or decrease the object length.
flss Short aliases for most FLCore classes construction methods
FLStock Class FLStock
FLStock-class Class FLStock
FLStock-method Class FLStock
FLStock-methods Class FLStock
FLStockLen Class FLStockLen
FLStockLen-class Class FLStockLen
FLStockLen-method Class FLStockLen
FLStockLen-methods Class FLStockLen
FLStocks Class FLStocks
FLStocks-class Class FLStocks
FLStocks-method Class FLStocks
FLStocks-methods Class FLStocks

-- G --

getSlotNamesClass Names of slots of a given class
gr-method Class FLSR
gr<--method Class FLSR

-- H --

halfwidth-method Class FLStockLen
halfwidth<--method Class FLStockLen
harvest-method Class FLStock
harvest-method Class FLStockLen
harvest.spwn-method Class FLStock
harvest.spwn-method Class FLStockLen
harvest.spwn<--method Class FLStock
harvest.spwn<--method Class FLStockLen
harvest<--method Class FLStock
harvest<--method Class FLStockLen
hessian-method Class FLSR
hessian<--method Class FLSR
histogram-method Lattice methods

-- I --

index-method Class FLIndex
index-method Class FLIndexBiomass
index.q-method Class FLIndex
index.q-method Class FLIndexBiomass
index.q<--method Class FLIndex
index.q<--method Class FLIndexBiomass
index.var-method Class FLIndex
index.var-method Class FLIndexBiomass
index.var<--method Class FLIndex
index.var<--method Class FLIndexBiomass
index<--method Class FLIndex
index<--method Class FLIndexBiomass
initial-method Class FLSR
initial<--method Class FLSR
iter Methods iter
iter-method Methods iter
iter-methods Methods iter
iterCVs Summaries by dimension
iterMeans Summaries by dimension
iterMedians Summaries by dimension
iterVars Summaries by dimension

-- L --

landings-method Class FLStock
landings-method Class FLStockLen
landings.n-method Class FLStock
landings.n-method Class FLStockLen
landings.n<--method Class FLStock
landings.n<--method Class FLStockLen
landings.wt-method Class FLStock
landings.wt-method Class FLStockLen
landings.wt<--method Class FLStock
landings.wt<--method Class FLStockLen
landings<--method Class FLStock
landings<--method Class FLStockLen
lattice Lattice methods
lattice-FLCore Lattice methods
logl-method Class FLSR
logl<--method Class FLSR
logLik-method Class FLSR
logLik<--method Class FLSR

-- M --

m-method Class FLBiol
m-method Class FLStock
m-method Class FLStockLen
m.spwn-method Class FLStock
m.spwn-method Class FLStockLen
m.spwn<--method Class FLStock
m.spwn<--method Class FLStockLen
m<--method Class FLBiol
m<--method Class FLStock
m<--method Class FLStockLen
mat-method Class FLStock
mat-method Class FLStockLen
mat<--method Class FLStock
mat<--method Class FLStockLen
model-method Class FLSR
model<--method Class FLSR

-- N --

n-method Class FLBiol
n<--method Class FLBiol
name-method Class FLBiol
name-method Class FLIndex
name-method Class FLIndexBiomass
name-method Class FLSR
name-method Class FLStock
name-method Class FLStockLen
name<--method Class FLBiol
name<--method Class FLIndex
name<--method Class FLIndexBiomass
name<--method Class FLSR
name<--method Class FLStock
name<--method Class FLStockLen
names Method names
names-method Method names
names<--method Method names
nsher FLCore datasets

-- O --

operators FLQuant arithmetic operators

-- P --

params-method Class FLSR
params<--method Class FLSR
ple4 FLCore datasets
ple4.biol FLCore datasets
ple4.index FLCore datasets
ple4.indices FLCore datasets
ple4sex FLCore datasets
plot Method plot
plot-method Method plot
predictModel A class for model prediction
predictModel-class A class for model prediction
predictModel-method A class for model prediction
predictModel-methods A class for model prediction

-- Q --

quant Method quant
quant-method Method quant
quant-methods Method quant
quant<--method Method quant
quantMeans Summaries by dimension
quantSums Summaries by dimension
quantSums-method Summaries by dimension
quantSums-methods Summaries by dimension
quantTotals Methods quantTotals
quantTotals-methods Methods quantTotals
quantVars Summaries by dimension

-- R --

range-method Class FLBiol
range-method Class FLIndex
range-method Class FLIndexBiomass
range-method Class FLSR
range-method Class FLStock
range-method Class FLStockLen
range<--method Class FLBiol
range<--method Class FLIndex
range<--method Class FLIndexBiomass
range<--method Class FLSR
range<--method Class FLStock
range<--method Class FLStockLen
rec-method Class FLSR
rec<--method Class FLSR
residuals-method Class FLSR
residuals<--method Class FLSR

-- S --

seasonMeans Summaries by dimension
seasonSums Summaries by dimension
seasonSums-method Summaries by dimension
seasonVars Summaries by dimension
sel.pattern-method Class FLIndex
sel.pattern-method Class FLIndexBiomass
sel.pattern<--method Class FLIndex
sel.pattern<--method Class FLIndexBiomass
show Method show
show-method Method show
splom Method splom
splom-method Method splom
spwn-method Class FLBiol
spwn<--method Class FLBiol
ssb Calculate or return the Spawning Stock Biomass
ssb-FLBiol,method Calculate or return the Spawning Stock Biomass
ssb-FLStock,method Calculate or return the Spawning Stock Biomass
ssb-method Class FLSR
ssb-method Calculate or return the Spawning Stock Biomass
ssb-methods Calculate or return the Spawning Stock Biomass
ssb<--method Class FLSR
stock-method Class FLStock
stock-method Class FLStockLen
stock.n-method Class FLStock
stock.n-method Class FLStockLen
stock.n<--method Class FLStock
stock.n<--method Class FLStockLen
stock.wt-method Class FLStock
stock.wt-method Class FLStockLen
stock.wt<--method Class FLStock
stock.wt<--method Class FLStockLen
stock<--method Class FLStock
stock<--method Class FLStockLen
stripplot-method Lattice methods
summary Method summary
summary-method Method summary

-- T --

trim Method trim
trim-method Method trim
trim-methods Method trim
type-method Class FLIndex
type<--method Class FLIndex

-- U --

unitMeans Summaries by dimension
units Method units
units-method Method units
units<--method Method units
unitSums Summaries by dimension
unitSums-method Summaries by dimension
unitVars Summaries by dimension
uom uom Units of Measurement

-- V --

vcov-method Class FLSR
vcov<--method Class FLSR

-- W --

wireframe Method wireframe
wireframe-method Method wireframe
wt-method Class FLBiol
wt<--method Class FLBiol

-- X --

xyplot-method Lattice methods

-- Y --

yearMeans Summaries by dimension
yearSums Summaries by dimension
yearSums-method Summaries by dimension
yearTotals Methods quantTotals
yearTotals-methods Methods quantTotals
yearVars Summaries by dimension

-- misc --

$-method Extract
$<--method Extract
%*%-method FLQuant arithmetic operators
%+% FLQuant arithmetic operators
%+%-method FLQuant arithmetic operators
%-% FLQuant arithmetic operators
%-%-method FLQuant arithmetic operators
%/%-method FLQuant arithmetic operators
%^% FLQuant arithmetic operators
%^%-method FLQuant arithmetic operators
[-method Extract
[<--method Extract
[[<--method Extract
`[<-,FLArray,ANY,ANY,ANY-method` Extract
`[<-,FLArray,ANY,ANY,FLArray-method` Extract