## SPiCT data file
##
## Commercial catches must be assigned a time INTERVAL given by "time_start" and "time_end"
## and must have fleet number 1.
##
## Indices of exploitable stock biomass are assumed to be snapshots in time, so "time_start" should equal "time_end" 
## (If not, the midpoint is used). Allowed fleet numbers are 2 to 998. Separate catchabilities and variances are estimated for each fleet number.
##
## Total commercial effort may be provided, and should have fleet number 999.
##
## The column "obs" contain the actual observations. Only positive values are used.
##
## Relative observation weights may be provided in the column "stdevfac". 
## The standard deviation of observation error (on log scale, which is approximately the CV) is assumed to be proportional to this number.
##

"time_start","time_end","fleet","obs","stdevfac"
#CATCHES, early time series not used - start with first index start
#1990,1991,1,3821,1
#1991,1992,1,5372,1
1992,1993,1,6577,1
1993,1994,1,5367,1
1994,1995,1,5201,1
1995,1996,1,7400,1
1996,1997,1,7837,1
1997,1998,1,8601,1
1998,1999,1,10671,1
1999,2000,1,10593,1
2000,2001,1,7574,1
2001,2002,1,7072,1
2002,2003,1,11718,1
2003,2004,1,11571,1
2004,2005,1,12857,1
2005,2006,1,12451,1
2006,2007,1,12114,1
2007,2008,1,10381,1
2008,2009,1,7700,1
2009,2010,1,6321,1
2010,2011,1,8877,1
2011,2012,1,7411,1
2012,2013,1,7898,1
2013,2014,1,9068,1
2014,2015,1,9173,1
2015,2016,1,8674,1
2016,2017,1,10760,1
2017,2018,1,6409,1
2018,2019,1,8399,1
2019,2020,1,8759,1
2020,2021,1,7602,1
2021,2022,1,9028,1

#trawl_survey_SK, 1 outlier identified (2004)
1992.5,1992.5,2,4.99,1
1993.5,1993.5,2,2.51,1
1994.5,1994.5,2,3.6,1
1995.5,1995.5,2,5.79,1
1996.5,1996.5,2,8.59,1
1997.5,1997.5,2,6.46,1
1998.5,1998.5,2,11.87,1
1999.5,1999.5,2,8.06,1
2000.5,2000.5,2,9.54,1
2001.5,2001.5,2,10.16,1
2002.5,2002.5,2,9.07,1
2003.5,2003.5,2,16.56,1
2004.5,2004.5,2,28.23,10 #made higly uncertain

#trawl_survey_CO, no outliers identified
2005.5,2005.5,3,22.58,1
2006.5,2006.5,3,20.25,1
2007.5,2007.5,3,13.14,1
2008.5,2008.5,3,16.42,1
2009.5,2009.5,3,19.9,1
2010.5,2010.5,3,17.56,1
2011.5,2011.5,3,23.98,1
2012.5,2012.5,3,16.17,1
2013.5,2013.5,3,15.1,1
2014.5,2014.5,3,11.46,1
2015.5,2015.5,3,13.18,1
2016.5,2016.5,3,11.77,1
2017.5,2017.5,3,12.04,1
2018.5,2018.5,3,17.35,1
2019.5,2019.5,3,11.6,1
2020.5,2020.5,3,15.13,1

#gillnet survey >35cm only from length distribution, time series before 2008 estimated from regression, 2012 from length distribution only
#outliers identfied in 2011 og 2021 
#90 mm nets not included in index
2001.5,2001.5,4,282.32704,1
2002.5,2002.5,4,142.03072,1
2003.5,2003.5,4,198.86372,1
2004.5,2004.5,4,230.04068,1
2005.5,2005.5,4,253.74816,1
2006.5,2006.5,4,133.09982,1
2007.5,2007.5,4,104.35856,1
2008.5,2008.5,4,203.11317702515,1
2010.5,2010.5,4,200.184155490772,1
2011.5,2011.5,4,409.806188275869,10 #made higly uncertain
2012.5,2012.5,4,145.689564229188,5 # uncertainty because of bad 60mm nets 
2013.5,2013.5,4,173.511252868795,1
2014.5,2014.5,4,195.610904373047,1
2015.5,2015.5,4,169.941394379852,1
2016.5,2016.5,4,147.142934734951,1
2017.5,2017.5,4,155.567631840013,1
2018.5,2018.5,4,168.679854971184,1
2019.5,2019.5,4,260.977884442049,1
2020.5,2020.5,4,289.754168771386,1
2021.5,2021.5,4,436.214171329969,5 # maybe true development, so uncertainty kept relatively high

#logbook_CPUE, longline
2009.5,2009.5,5,495.274102079395,1
2010.5,2010.5,5,420.132325141776,1
2011.5,2011.5,5,378.544423440453,1
2012.5,2012.5,5,401.701323251417,1
2013.5,2013.5,5,377.599243856332,1
2014.5,2014.5,5,371.928166351606,1
2015.5,2015.5,5,309.073724007561,1
2016.5,2016.5,5,346.8809073724,1
2017.5,2017.5,5,225.897920604914,1
2018.5,2018.5,5,288.279773156899,1
2019.5,2019.5,5,270.321361058601,1
2020.5,2020.5,5,260.39697542533,1
2021.5,2021.5,5,291.587901701323,1

#logbook_CPUE, gillnet
#2010.5,2010.5,6,43.65,1
#2011.5,2011.5,6,39.14,1
#2012.5,2012.5,6,41.77,1
#2013.5,2013.5,6,39.13,1
#2014.5,2014.5,6,38.59,1
#2015.5,2015.5,6,31.81,1
#2016.5,2016.5,6,36.14,1
#2017.5,2017.5,6,23.08,1
#2018.5,2018.5,6,29.8,1
#2019.5,2019.5,6,27.83,1
#2020.5,2020.5,6,26.8,1
#2021.5,2021.5,6,30.22,1

#gillnet_survey, raw values from SCR
#2001.5,2001.5,4,18.08,1
#2002.5,2002.5,4,9.44,1
#2003.5,2003.5,4,12.94,1
#2004.5,2004.5,4,14.86,1
#2005.5,2005.5,4,16.32,1
#2006.5,2006.5,4,8.89,1
#2007.5,2007.5,4,7.12,1
#2008.5,2008.5,4,14.8,1
#2010.5,2010.5,4,14.01,1
#2011.5,2011.5,4,25.1,1
#2013.5,2013.5,4,12.53,1
#2014.5,2014.5,4,12.42,1
#2015.5,2015.5,4,10.1,1
#2016.5,2016.5,4,9.69,1
#2017.5,2017.5,4,9.14,1
#2018.5,2018.5,4,10.91,1
#2019.5,2019.5,4,16.44,1
#2020.5,2020.5,4,18.86,1
#2021.5,2021.5,4,27.4,1

#landing_cpue
#2013,2013,6,47.39,1
#2014,2014,6,40.46,1
#2015,2015,6,35.79,1
#2016,2016,6,33.57,1
#2017,2017,6,23.99,1
#2018,2018,6,32.24,1
#2019,2019,6,28.73,1
#2020,2020,6,29.74,1
#2021,2021,6,36.21,1

#gillnet survey >35cm only, smoothed, 
#2001.5,2001.5,8,238.8364,1
#2002.5,2002.5,8,221.4341,1
#2003.5,2003.5,8,206.3466,1
#2004.5,2004.5,8,194.067,1
#2005.5,2005.5,8,184.3464,1
#2006.5,2006.5,8,178.4381,1
#2007.5,2007.5,8,174.616,1
#2008.5,2008.5,8,171.2825,1
#2010.5,2010.5,8,170.2397,1
#2012.5,2012.5,8,172.473,1
#2013.5,2013.5,8,171.3251,1
#2014.5,2014.5,8,160.9604,1
#2015.5,2015.5,8,162.6841,1
#2016.5,2016.5,8,170.123,1
#2017.5,2017.5,8,185.6663,1
#2018.5,2018.5,8,207.634,1
#2019.5,2019.5,8,237.3995,1
#2020.5,2020.5,8,274.4168,1

#CPUE index fra GLM, garn+line kombineret 
#2009.5,2009.5,9,1.3868613,1
#2010.5,2010.5,9,1,1
#2011.5,2011.5,9,0.7833184,1
#2012.5,2012.5,9,0.9068571,1
#2013.5,2013.5,9,0.7806422,1
#2014.5,2014.5,9,0.7529178,1
#2015.5,2015.5,9,0.4263142,1
#2016.5,2016.5,9,0.6288881,1
#2017.5,2017.5,9,0,1
#2018.5,2018.5,9,0.3239286,1
#2019.5,2019.5,9,0.2298146,1
#2020.5,2020.5,9,0.1792307,1
#2021.5,2021.5,9,0.3426535,1